CNVRuler is designed for CNVR based association study with user-friendly graphic interface.

All forms of major CNV call outputs from different segmentation tools such as Genotyping Console, Genome Studio, Genomic Workbench, BirdSuite, PennCNV and Nexus can be processed without additional converting step.

CNVRuler supports defining three different types of CNVRs and four statistical methods for CNVR based association study. Users can analyze CNVR-phenotype associations with their preferable segmentation tools and can test various combinations of different CNVR definitions and statistical methods suitable for their study design.

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Manual	Download (PDF)

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Examples	CNV	3 samples from Genome Studio	Clinical Information*	Download
	CNV	10 samples from Genomic Workbench**	Clinical Information*	Download
	CNV	7 samples from Genotyping Console (zip compressed)	Clinical Information*	Download
	CNV	204 samples from TCGA***	Clinical Information*	Download
* All clinical information is generated randomly. ** Example for a linear regression. Please, set Minor Allele Threshold to 0. *** This is a cancer data set with bogus information. If you want to test producing some result, please, set Gain/Loss separated regions to ON.